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Yes, sometimes they have broken down due to mutations and genetic entropy. That does not mean that the Master Engineer was not involved; he put things in place for specific reasons. Biblical creationists have maintained that God did not make junk, nor did he use evolution. Unfortunately, naturalists cannot admit to evidence for creation, so they continue with their unscientific vexatious antics.
Some evolutionists have promoted the idea that similar sequences in pseudogenes strongly support common ancestry, especially between humans and great apes. The alleged disruptions in the sequence are attributed to random copying errors. If two organisms appear to carry identical disruptions, then it is considered far more likely that they both inherited them from a common ancestor than that those errors occurred independently. While created genes might need to be identical in some regions to carry out their normal function, no-one would expect a creator to put the same error in two different organisms.To read this article from the beginning, click on "Pseudo-pseudogenes: revealing further complexity in the genome".
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